{ "_id": "6a1f3854b401979e73428dd6", "Package": "BPCells", "Title": "Single Cell Counts Matrices to PCA", "Version": "0.3.1", "Authors@R": "c(\nperson(given = \"Benjamin\",\nfamily = \"Parks\",\nrole = c(\"aut\", \"cre\", \"cph\"),\nemail = \"bparks@alumni.stanford.edu\",\ncomment = c(ORCID = \"0000-0002-0261-7472\")),\nperson(\"Immanuel\", \"Abdi\", role = \"aut\"),\nperson(\"Stanford University\", role=c(\"cph\", \"fnd\")),\nperson(\"Genentech, Inc.\", role=c(\"cph\", \"fnd\")))", "Description": "> Efficient operations for single cell ATAC-seq fragments\nand RNA counts matrices. Interoperable with standard file\nformats, and introduces efficient bit-packed formats that allow\nlarge storage savings and increased read speeds.", "License": "Apache-2.0 or MIT", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.3.2", "Roxygen": "list(markdown = TRUE)", "URL": "https://bnprks.github.io/BPCells,\nhttps://github.com/bnprks/BPCells", "Config/Needs/website": "pkgdown, devtools, uwot, irlba, RcppHNSW, igraph,\nBiocManager, bioc::BSgenome.Hsapiens.UCSC.hg38,\ngithub::GreenleafLab/motifmatchr,\ngithub::GreenleafLab/chromVARmotifs, png, magrittr", "Config/pak/sysreqs": "libicu-dev libx11-dev", "Repository": "https://bnprks.r-universe.dev", "Date/Publication": "2026-05-12 15:35:30 UTC", "RemoteUrl": "https://github.com/bnprks/BPCells", "RemoteRef": "HEAD", "RemoteSha": "adc4a3c30f60a03522f58947d733d7d77a6eb2cf", "RemoteSubdir": "r", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-05-12 17:24:51 UTC", "User": "root" }, "Author": "Benjamin Parks [aut, cre, cph] (ORCID:\n),\nImmanuel Abdi [aut],\nStanford University [cph, fnd],\nGenentech, Inc. [cph, fnd]", "Maintainer": "Benjamin Parks ", "MD5sum": "c0b6805fad21763c22f653749a522437", "_user": "bnprks", "_type": "src", "_file": "BPCells_0.3.1.tar.gz", "_fileid": "049ce8f260707091f4ab60a392993a04304b82f2c89131a8b5379e8416f080c0", "_filesize": 4542021, "_sha256": "049ce8f260707091f4ab60a392993a04304b82f2c89131a8b5379e8416f080c0", "_created": "2026-05-12T17:24:51.000Z", "_published": "2026-06-02T20:08:52.932Z", "_distro": "noble", "_jobs": [ { "job": 79161944740, "time": 476, "config": "linux-devel-arm64", "r": "4.7.0", "check": "ERROR", "artifact": "6951432211" }, { "job": 79161944365, "time": 524, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "ERROR", "artifact": "6951449396" }, { "job": 79161944532, "time": 519, "config": "linux-release-arm64", "r": "4.6.0", "check": "ERROR", "artifact": "6951447636" }, { "job": 79161944595, "time": 518, "config": "linux-release-x86_64", "r": "4.6.0", "check": "ERROR", "artifact": "6951449046" }, { "job": 79161944701, "time": 459, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "ERROR", "artifact": "6951424951" }, { "job": 79161944527, "time": 1003, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "ERROR", "artifact": "6951629247" }, { "job": 79161944177, "time": 281, "config": "macos-release-arm64", "r": "4.6.0", "check": "ERROR", "artifact": "6951361561" }, { "job": 79161944257, "time": 977, "config": "macos-release-x86_64", "r": "4.6.0", "check": "ERROR", "artifact": "6951619886" }, { "job": 79161943716, "time": 494, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "6951261549" }, { "job": 79161943371, "time": 126, "config": "wasm-release", "r": "4.6.0", "check": "FAIL", "artifact": "" }, { "job": 79161943934, "time": 803, "config": "windows-devel", "r": "4.7.0", "check": "ERROR", "artifact": "6951551594" }, { "job": 79161944728, "time": 668, "config": "windows-oldrel", "r": "4.5.3", "check": "ERROR", "artifact": "6951501856" }, { "job": 79161943925, "time": 711, "config": "windows-release", "r": "4.6.0", "check": "ERROR", "artifact": "6951517186" } ], "_buildurl": "https://github.com/r-universe/bnprks/actions/runs/25750665749", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bnprks/BPCells", "_commit": { "id": "adc4a3c30f60a03522f58947d733d7d77a6eb2cf", "author": "Thomas Koefoed <53121948+koefoeden@users.noreply.github.com>", "committer": "GitHub ", "message": "[r] Fix iterative peak merging for isolated peaks (#338)\n\n* [r] Fix iterative peak merging for isolated peaks", "time": 1778600130 }, "_maintainer": { "name": "Benjamin Parks", "email": "bparks@alumni.stanford.edu", "orcid": "0000-0002-0261-7472" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.0.0", "role": "Depends" }, { "package": "Rcpp", "role": "LinkingTo" }, { "package": "RcppEigen", "role": "LinkingTo" }, { "package": "methods", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "magrittr", "role": "Imports" }, { "package": "Matrix", "role": "Imports" }, { "package": "Rcpp", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "tools", "role": "Imports" }, { "package": "vctrs", "role": "Imports" }, { "package": "lifecycle", "role": "Imports" }, { "package": "stringr", "role": "Imports" }, { "package": "tibble", "role": "Imports" }, { "package": "dplyr", "version": ">= 1.0.0", "role": "Imports" }, { "package": "tidyr", "role": "Imports" }, { "package": "readr", "role": "Imports" }, { "package": "ggplot2", "version": ">= 3.4.0", "role": "Imports" }, { "package": "scales", "role": "Imports" }, { "package": "patchwork", "role": "Imports" }, { "package": "scattermore", "role": "Imports" }, { "package": "ggrepel", "role": "Imports" }, { "package": "RColorBrewer", "role": "Imports" }, { "package": "hexbin", "role": "Imports" }, { "package": "IRanges", "role": "Suggests" }, { "package": "GenomicRanges", "role": "Suggests" }, { "package": "matrixStats", "role": "Suggests" }, { "package": "igraph", "role": "Suggests" }, { "package": "RcppHNSW", "role": "Suggests" }, { "package": "RcppAnnoy", "role": "Suggests" } ], "_owner": "bnprks", "_selfowned": true, "_usedby": 5, "_updates": [ { "week": "2025-20", "n": 1 }, { "week": "2025-21", "n": 1 }, { "week": "2025-24", "n": 2 }, { "week": "2025-25", "n": 1 }, { "week": "2025-26", "n": 10 }, { "week": "2025-30", "n": 2 }, { "week": "2025-31", "n": 1 }, { "week": "2025-37", "n": 1 }, { "week": "2025-38", "n": 1 }, { "week": "2025-46", "n": 2 }, { "week": "2025-51", "n": 2 }, { "week": "2026-15", "n": 1 }, { "week": "2026-19", "n": 1 }, { "week": "2026-20", "n": 1 } ], "_tags": [ { "name": "v0.3.1", "date": "2025-07-21" } ], "_stars": 281, "_contributors": [ { "user": "bnprks", "count": 413, "uuid": 4207803 }, { "user": "immanuelazn", "count": 43, "uuid": 56730419 }, { "user": "ycli1995", "count": 6, "uuid": 105353386 }, { "user": "brgew", "count": 4, "uuid": 11478979 }, { "user": "erliuu", "count": 2, "uuid": 84125630 }, { "user": "tncowart", "count": 2, "uuid": 719958 }, { "user": "douglasgscofield", "count": 1, "uuid": 1641090 }, { "user": "mfansler", "count": 1, "uuid": 1182216 }, { "user": "koefoeden", "count": 1, "uuid": 53121948 }, { "user": "wjgreenleaf", "count": 1, "uuid": 8533874 } ], "_userbio": { "uuid": 4207803, "type": "user", "name": "Ben Parks" }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/BPCells" }, "_devurl": "https://github.com/bnprks/bpcells", "_pkgdown": "https://bnprks.github.io/BPCells", "_searchresults": 782, "_topics": [ "zlib", "hdf5", "cpp" ], "_rbuild": "4.6.0", "_assets": [ "extra/BPCells.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_cranurl": false, "_exports": [ "%>%", "add_cols", "add_rows", "all_matrix_inputs", "all_matrix_inputs<-", "apply_by_col", "apply_by_row", "as.data.frame", "as.matrix", "binarize", "call_macs_peaks", "call_peaks_macs", "call_peaks_tile", "canonical_gene_symbol", "cellNames", "cellNames<-", "checksum", "chrNames", "chrNames<-", "cluster_cells_graph", "cluster_graph_leiden", "cluster_graph_louvain", "cluster_graph_seurat", "collect_features", "colMaxs", "colMaxs.default", "colMaxs.IterableMatrix", "colMeans", "colQuantiles", "colQuantiles.default", "colQuantiles.IterableMatrix", "colSums", "colVars", "colVars.default", "colVars.IterableMatrix", "continuous_palette", "convert_matrix_type", "convert_to_fragments", "discrete_palette", "draw_trackplot_grid", "expm1_slow", "extend_ranges", "footprint", "fragments_identical", "gene_region", "gene_score_archr", "gene_score_tiles_archr", "gene_score_weights_archr", "get_demo_frags", "get_demo_mat", "get_trackplot_height", "import_matrix_market", "import_matrix_market_10x", "knn_annoy", "knn_hnsw", "knn_to_geodesic_graph", "knn_to_snn_graph", "log1p_slow", "marker_features", "match_gene_symbol", "matrix_stats", "matrix_type", "merge_cells", "merge_peaks_iterative", "min_by_col", "min_by_row", "min_scalar", "multiply_cols", "multiply_rows", "normalize_ranges", "nucleosome_counts", "open_fragments_10x", "open_fragments_dir", "open_fragments_hdf5", "open_matrix_10x_hdf5", "open_matrix_anndata_hdf5", "open_matrix_dir", "open_matrix_hdf5", "order_ranges", "peak_matrix", "plot_dot", "plot_embedding", "plot_fragment_length", "plot_read_count_knee", "plot_tf_footprint", "plot_tss_profile", "plot_tss_scatter", "prefix_cell_names", "pseudobulk_matrix", "qc_scATAC", "range_distance_to_nearest", "read_bed", "read_encode_blacklist", "read_gencode_genes", "read_gencode_transcripts", "read_gtf", "read_ucsc_chrom_sizes", "regress_out", "remove_demo_data", "rotate_x_labels", "rowMaxs", "rowMaxs.default", "rowMaxs.IterableMatrix", "rowMeans", "rowQuantiles", "rowQuantiles.default", "rowQuantiles.IterableMatrix", "rowSums", "rowVars", "rowVars.default", "rowVars.IterableMatrix", "sctransform_pearson", "select_cells", "select_chromosomes", "select_regions", "set_trackplot_height", "set_trackplot_label", "shift_fragments", "storage_order", "subset_lengths", "svds", "t", "tile_matrix", "trackplot_bulk", "trackplot_combine", "trackplot_coverage", "trackplot_gene", "trackplot_genome_annotation", "trackplot_loop", "trackplot_scalebar", "transpose_storage_order", "write_fragments_10x", "write_fragments_dir", "write_fragments_hdf5", "write_fragments_memory", "write_insertion_bed", "write_insertion_bedgraph", "write_matrix_10x_hdf5", "write_matrix_anndata_hdf5", "write_matrix_anndata_hdf5_dense", "write_matrix_dir", "write_matrix_hdf5", "write_matrix_memory" ], "_datasets": [ { "name": "human_gene_mapping", "title": "Gene Symbol Mapping data", "object": "human_gene_mapping", "class": [ "character" ], "fields": [], "table": false, "tojson": true }, { "name": "mouse_gene_mapping", "title": "Gene Symbol Mapping data", "object": "mouse_gene_mapping", "class": [ "character" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "mat_norm", "title": "Broadcasting vector arithmetic", "topics": [ "add_cols", "add_rows", "multiply_cols", "multiply_rows" ] }, { "page": "all_matrix_inputs", "title": "Get/set inputs to a matrix transform", "topics": [ "all_matrix_inputs", "all_matrix_inputs<-" ] }, { "page": "apply_by_row", "title": "Apply a function to summarize rows/cols", "topics": [ "apply_by_col", "apply_by_row" ] }, { "page": "binarize", "title": "Convert matrix elements to zeros and ones", "topics": [ "binarize" ] }, { "page": "call_peaks_macs", "title": "Call peaks using MACS2/3", "topics": [ "call_peaks_macs" ] }, { "page": "call_peaks_tile", "title": "Call peaks from tiles", "topics": [ "call_peaks_tile" ] }, { "page": "checksum", "title": "Calculate the MD5 checksum of an IterableMatrix", "topics": [ "checksum" ] }, { "page": "cluster_cells_graph", "title": "Cluster cell embeddings using a KNN graph-based algorithm", "topics": [ "cluster_cells_graph" ] }, { "page": "cluster_graph", "title": "Cluster an adjacency matrix", "topics": [ "cluster_graph_leiden", "cluster_graph_louvain", "cluster_graph_seurat" ] }, { "page": "cluster_membership_matrix", "title": "Convert grouping vector to sparse matrix", "topics": [ "cluster_membership_matrix" ] }, { "page": "collect_features", "title": "Collect features for plotting", "topics": [ "collect_features" ] }, { "page": "convert_matrix_type", "title": "Convert the type of a matrix", "topics": [ "convert_matrix_type" ] }, { "page": "fragment_R_conversion", "title": "Convert between BPCells fragments and R objects.", "topics": [ "convert_to_fragments" ] }, { "page": "palettes", "title": "Color palettes", "topics": [ "continuous_palette", "discrete_palette" ] }, { "page": "extend_ranges", "title": "Extend genome ranges in a strand-aware fashion.", "topics": [ "extend_ranges" ] }, { "page": "footprint", "title": "Get footprints around a set of genomic coordinates", "topics": [ "footprint" ] }, { "page": "fragments_identical", "title": "Check if two fragments objects are identical", "topics": [ "fragments_identical" ] }, { "page": "gene_region", "title": "Find gene region", "topics": [ "gene_region" ] }, { "page": "gene_score_tiles_archr", "title": "Calculate gene-tile distances for ArchR gene activities", "topics": [ "gene_score_tiles_archr" ] }, { "page": "gene_scores", "title": "Calculate GeneActivityScores", "topics": [ "gene_score_archr", "gene_score_weights_archr" ] }, { "page": "genomic-ranges-like", "title": "Genomic range formats", "topics": [ "genomic-ranges-like" ] }, { "page": "demo_data", "title": "Retrieve BPCells demo data", "topics": [ "get_demo_frags", "get_demo_mat", "remove_demo_data" ] }, { "page": "gene_mapping", "title": "Gene Symbol Mapping data", "topics": [ "human_gene_mapping", "mouse_gene_mapping" ] }, { "page": "import_matrix_market", "title": "Import MatrixMarket files", "topics": [ "import_matrix_market", "import_matrix_market_10x" ] }, { "page": "IterableFragments-methods", "title": "IterableFragments methods", "topics": [ "cellNames", "cellNames<-", "chrNames", "chrNames<-", "IterableFragments-methods", "show,IterableFragments-method" ] }, { "page": "IterableMatrix-methods", "title": "IterableMatrix methods", "topics": [ "%*%,IterableMatrix,matrix-method", "*,IterableMatrix,numeric-method", "+,IterableMatrix,numeric-method", "-,IterableMatrix,numeric-method", "/,IterableMatrix,numeric-method", "<,numeric,IterableMatrix-method", "<=,numeric,IterableMatrix-method", ">,IterableMatrix,numeric-method", ">=,IterableMatrix,numeric-method", "colMaxs", "colMeans,IterableMatrix-method", "colQuantiles", "colSums,IterableMatrix-method", "colVars", "expm1,IterableMatrix-method", "expm1_slow", "IterableMatrix-methods", "log1p,IterableMatrix-method", "log1p_slow", "matrix_type", "round,IterableMatrix-method", "rowMaxs", "rowMeans,IterableMatrix-method", "rowQuantiles", "rowSums,IterableMatrix-method", "rowVars", "show,IterableMatrix-method", "storage_order", "t,IterableMatrix-method", "^,IterableMatrix,numeric-method" ] }, { "page": "knn", "title": "Get a knn object from reduced dimensions", "topics": [ "knn_annoy", "knn_hnsw" ] }, { "page": "knn_graph", "title": "K Nearest Neighbor (KNN) Graph", "topics": [ "knn_to_geodesic_graph", "knn_to_graph", "knn_to_snn_graph" ] }, { "page": "marker_features", "title": "Test for marker features", "topics": [ "marker_features" ] }, { "page": "gene_matching", "title": "Gene symbol matching", "topics": [ "canonical_gene_symbol", "match_gene_symbol" ] }, { "page": "matrix_R_conversion", "title": "Convert between BPCells matrix and R objects.", "topics": [ "matrix_R_conversion" ] }, { "page": "matrix_stats", "title": "Calculate matrix stats", "topics": [ "matrix_stats" ] }, { "page": "merge_cells", "title": "Merge cells into pseudobulks", "topics": [ "merge_cells" ] }, { "page": "merge_peaks_iterative", "title": "Merge peaks", "topics": [ "merge_peaks_iterative" ] }, { "page": "min_elementwise", "title": "Elementwise minimum", "topics": [ "min_by_col", "min_by_row", "min_scalar" ] }, { "page": "normalize_ranges", "title": "Normalize an object representing genomic ranges", "topics": [ "normalize_ranges" ] }, { "page": "nucleosome_counts", "title": "Count fragments by nucleosomal size", "topics": [ "nucleosome_counts" ] }, { "page": "open_fragments_10x", "title": "Read/write a 10x fragments file", "topics": [ "open_fragments_10x", "write_fragments_10x" ] }, { "page": "open_matrix_10x_hdf5", "title": "Read/write a 10x feature matrix", "topics": [ "open_matrix_10x_hdf5", "write_matrix_10x_hdf5" ] }, { "page": "open_matrix_anndata_hdf5", "title": "Read/write AnnData matrix", "topics": [ "open_matrix_anndata_hdf5", "write_matrix_anndata_hdf5", "write_matrix_anndata_hdf5_dense" ] }, { "page": "order_ranges", "title": "Get end-sorted ordering for genome ranges", "topics": [ "order_ranges" ] }, { "page": "peak_matrix", "title": "Calculate ranges x cells overlap matrix", "topics": [ "peak_matrix" ] }, { "page": "plot_dot", "title": "Dotplot", "topics": [ "plot_dot" ] }, { "page": "plot_embedding", "title": "Plot UMAP or embeddings", "topics": [ "plot_embedding" ] }, { "page": "plot_fragment_length", "title": "Fragment size distribution", "topics": [ "plot_fragment_length" ] }, { "page": "plot_read_count_knee", "title": "Knee plot of single cell read counts", "topics": [ "plot_read_count_knee" ] }, { "page": "plot_tf_footprint", "title": "Plot TF footprint", "topics": [ "plot_tf_footprint" ] }, { "page": "plot_tss_profile", "title": "Plot TSS profile", "topics": [ "plot_tss_profile" ] }, { "page": "plot_tss_scatter", "title": "TSS Enrichment vs. Fragment Counts plot", "topics": [ "plot_tss_scatter" ] }, { "page": "prefix_cell_names", "title": "Add sample prefix to cell names", "topics": [ "prefix_cell_names" ] }, { "page": "pseudobulk_matrix", "title": "Aggregate counts matrices by cell group or feature.", "topics": [ "pseudobulk_matrix" ] }, { "page": "qc_scATAC", "title": "Calculate ArchR-compatible per-cell QC statistics", "topics": [ "qc_scATAC" ] }, { "page": "range_distance_to_nearest", "title": "Find signed distance to nearest genomic ranges", "topics": [ "range_distance_to_nearest" ] }, { "page": "read_bed", "title": "Read a bed file into a data frame", "topics": [ "read_bed", "read_encode_blacklist" ] }, { "page": "read_gtf", "title": "Read GTF gene annotations", "topics": [ "read_gencode_genes", "read_gencode_transcripts", "read_gtf" ] }, { "page": "read_ucsc_chrom_sizes", "title": "Read UCSC chromosome sizes", "topics": [ "read_ucsc_chrom_sizes" ] }, { "page": "regress_out", "title": "Regress out unwanted variation", "topics": [ "regress_out" ] }, { "page": "rotate_x_labels", "title": "Rotate ggplot x axis labels", "topics": [ "rotate_x_labels" ] }, { "page": "sctransform_pearson", "title": "SCTransform Pearson Residuals", "topics": [ "sctransform_pearson" ] }, { "page": "select_cells", "title": "Subset, translate, or reorder cell IDs", "topics": [ "select_cells" ] }, { "page": "select_chromosomes", "title": "Subset, translate, or reorder chromosome IDs", "topics": [ "select_chromosomes" ] }, { "page": "select_regions", "title": "Subset fragments by genomic region", "topics": [ "select_regions" ] }, { "page": "trackplot_utils", "title": "Adjust trackplot properties", "topics": [ "get_trackplot_height", "set_trackplot_height", "set_trackplot_label" ] }, { "page": "shift_fragments", "title": "Shift start or end coordinates", "topics": [ "shift_fragments" ] }, { "page": "subset_lengths", "title": "Subset fragments by length", "topics": [ "subset_lengths" ] }, { "page": "svds", "title": "Calculate svds", "topics": [ "svds" ] }, { "page": "tile_matrix", "title": "Calculate ranges x cells tile overlap matrix", "topics": [ "tile_matrix" ] }, { "page": "trackplot_combine", "title": "Combine track plots", "topics": [ "trackplot_combine" ] }, { "page": "trackplot_coverage", "title": "Pseudobulk coverage trackplot", "topics": [ "trackplot_coverage" ] }, { "page": "trackplot_gene", "title": "Plot transcript models", "topics": [ "trackplot_gene" ] }, { "page": "trackplot_genome_annotation", "title": "Plot range-based annotation tracks (e.g. peaks)", "topics": [ "trackplot_genome_annotation" ] }, { "page": "trackplot_loop", "title": "Plot loops", "topics": [ "trackplot_loop" ] }, { "page": "trackplot_scalebar", "title": "Plot scale bar", "topics": [ "trackplot_scalebar" ] }, { "page": "transpose_storage_order", "title": "Transpose the storage order for a matrix", "topics": [ "transpose_storage_order" ] }, { "page": "fragment_io", "title": "Read/write BPCells fragment objects", "topics": [ "open_fragments_dir", "open_fragments_hdf5", "write_fragments_dir", "write_fragments_hdf5", "write_fragments_memory" ] }, { "page": "write_insertion_bedgraph", "title": "Write insertion counts to bed/bedgraph file", "topics": [ "write_insertion_bed", "write_insertion_bedgraph" ] }, { "page": "matrix_io", "title": "Read/write sparse matrices", "topics": [ "open_matrix_dir", "open_matrix_hdf5", "write_matrix_dir", "write_matrix_hdf5", "write_matrix_memory" ] } ], "_readme": "https://github.com/bnprks/BPCells/raw/HEAD/r/index.md", "_rundeps": [ "bit", "bit64", "cli", "clipr", "cpp11", "crayon", "dplyr", "farver", "generics", "ggplot2", "ggrepel", "glue", "gtable", "hexbin", "hms", "isoband", "labeling", "lattice", "lifecycle", "magrittr", "Matrix", "patchwork", "pillar", "pkgconfig", "prettyunits", "progress", "purrr", "R6", "RColorBrewer", "Rcpp", "RcppEigen", "readr", "rlang", "S7", "scales", "scattermore", "stringi", "stringr", "tibble", "tidyr", "tidyselect", "tzdb", "utf8", "vctrs", "viridisLite", "vroom", "withr" ], "_sysdeps": [ { "shlib": "libz", "package": "zlib1g", "headers": "zlib1g-dev", "source": "zlib", "version": "1:1.3.dfsg-3.1ubuntu2.1", "name": "zlib", "homepage": "http://zlib.net/", "description": "compression library - runtime" }, { "shlib": "libhdf5_serial", "package": "libhdf5-103-1t64", "headers": "libhdf5-dev", "source": "hdf5", "version": "1.10.10+repack-3.1ubuntu4", "name": "hdf5", "homepage": "http://hdfgroup.org/HDF5/", "description": "HDF5 C runtime files - serial version" }, { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_score": 9.317344881474192, "_indexed": true, "_nocasepkg": "bpcells", "_universes": [ "bnprks" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.3.1", "date": "2026-05-12T17:32:36.000Z", "distro": "noble", "arch": "aarch64", "commit": "adc4a3c30f60a03522f58947d733d7d77a6eb2cf", "fileid": "68c66ce08c577588ba0a7e194c90f743383b341b1b06753f338bc70f283c9132", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bnprks/actions/runs/25750665749" }, { "r": "4.7.0", "os": "linux", "version": "0.3.1", "date": "2026-05-12T17:32:39.000Z", "distro": "noble", "arch": "x86_64", "commit": "adc4a3c30f60a03522f58947d733d7d77a6eb2cf", "fileid": "e8cafb553b5e52ceb1d114cd1370daf718f2936dfb8a3e628426a737975988b6", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bnprks/actions/runs/25750665749" }, { "r": "4.6.0", "os": "linux", "version": "0.3.1", "date": "2026-05-12T17:33:09.000Z", "distro": "noble", "arch": "aarch64", "commit": "adc4a3c30f60a03522f58947d733d7d77a6eb2cf", "fileid": "e5296b620f3c8843da1c7b322a8573819cac75b2484eaaf2f3eb7d4b4b57e0a6", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bnprks/actions/runs/25750665749" }, { "r": "4.6.0", "os": "linux", "version": "0.3.1", "date": "2026-05-12T17:32:27.000Z", "distro": "noble", "arch": "x86_64", "commit": "adc4a3c30f60a03522f58947d733d7d77a6eb2cf", "fileid": "222e51c16dddc5d0582b5ee05aa99853a64edfd87eed7ff8d8de92e3320ba77f", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bnprks/actions/runs/25750665749" }, { "r": "4.5.3", "os": "mac", "version": "0.3.1", "date": "2026-05-12T17:33:14.000Z", "arch": "aarch64", "commit": "adc4a3c30f60a03522f58947d733d7d77a6eb2cf", "fileid": "b0c958c005a3b870416b0c7dde7f3c68b7ffd1f142e6727fc12027333ea410e8", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bnprks/actions/runs/25750665749" }, { "r": "4.5.3", "os": "mac", "version": "0.3.1", "date": "2026-05-12T17:34:37.000Z", "arch": "x86_64", "commit": "adc4a3c30f60a03522f58947d733d7d77a6eb2cf", "fileid": "fa5180aa4757f4623ddac998ba6356282fb7ccd5c6a97e003371482607958eeb", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bnprks/actions/runs/25750665749" }, { "r": "4.6.0", "os": "mac", "version": "0.3.1", "date": "2026-05-12T17:32:06.000Z", "arch": "aarch64", "commit": "adc4a3c30f60a03522f58947d733d7d77a6eb2cf", "fileid": "31a0d1ecebd70034a638f5012159a87c7a35f867a57990c90df8d9fa81e780ae", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bnprks/actions/runs/25750665749" }, { "r": "4.6.0", "os": "mac", "version": "0.3.1", "date": "2026-05-12T17:34:49.000Z", "arch": "x86_64", "commit": "adc4a3c30f60a03522f58947d733d7d77a6eb2cf", "fileid": "b60291a5e503c8734d6d838aafe08a163cd505001caace86dae36bf539b3af0d", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bnprks/actions/runs/25750665749" }, { "r": "4.7.0", "os": "win", "version": "0.3.1", "date": "2026-05-12T17:33:28.000Z", "arch": "x86_64", "commit": "adc4a3c30f60a03522f58947d733d7d77a6eb2cf", "fileid": "a482879d2e67a83fc1bdd6f5099bc605349bb639b53ac6b32d90f5743004d05d", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bnprks/actions/runs/25750665749" }, { "r": "4.5.3", "os": "win", "version": "0.3.1", "date": "2026-05-12T17:33:17.000Z", "arch": "x86_64", "commit": "adc4a3c30f60a03522f58947d733d7d77a6eb2cf", "fileid": "73c641f0e1d019669e3b34e8958df2d8a7708c285e4ab5ac4018a4fe390e4850", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bnprks/actions/runs/25750665749" }, { "r": "4.6.0", "os": "win", "version": "0.3.1", "date": "2026-05-12T17:32:35.000Z", "arch": "x86_64", "commit": "adc4a3c30f60a03522f58947d733d7d77a6eb2cf", "fileid": "62ff66a0f4defc99d68e01bc263ea383a41755589876267d5222654ff17ab0cd", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bnprks/actions/runs/25750665749" } ] }